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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54033954_54034028_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54033954 - 54034028
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGGTTG
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGGAT
U12 Branch Point Sequence:
TCTGTTTTGAAG
Flanking Amino Acid:
RISLLLKRGMARYLQMFGAQ
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
59.4
41.9
Major BPS
66.4
0.41
1.4
65.3
43.7
Major PPT
77
0.61
1
78.5
33.7
Minor 5ss
34
-1.8
3.5
42.8
46.7
Minor BPS
48.9
-0.2
1.6
54.07
41.8

Associated Gene:

Gene:
XRCC3
Ensembl Gene ID:
ENSAPLG00000006917
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047272
54031181 - 54044061
12881