About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54042045_54042890_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54042045 - 54042890
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACAA
5'SS Class:
major
3'SS Sequence:
AAAAACTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATTGTTTAAAT
Flanking Amino Acid:
HSLRRNCVLTALQLYQDKDH
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
36.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
61.4
0.26
1
52
42.3
Minor 5ss
31.3
-2.1
3
39.2
46
Minor BPS
64.4
0.53
1.8
82.33
38.9

Associated Gene:

Gene:
XRCC3
Ensembl Gene ID:
ENSAPLG00000006917
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047272
54031181 - 54044061
12881
ENSAPLT00000021316
54029670 - 54044061
14392
ENSAPLT00000007190
54031181 - 54044061
12881