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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54043029_54043850_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54043029 - 54043850
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTCCTCTAATT
Flanking Amino Acid:
FGRSPAFRARADIKSIKEVL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
41.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.6
0.62
0.9
73.9
34.3
Minor 5ss
36.7
-1.5
3.3
47.6
48
Minor BPS
63
0.48
1.6
80.67
34.8

Associated Gene:

Gene:
XRCC3
Ensembl Gene ID:
ENSAPLG00000006917
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007190
54031181 - 54044061
12881