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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54053911_54054689_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54053911 - 54054689
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCGTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTTAATAAAAT
Flanking Amino Acid:
LMVCRLSNNQRYLVLDGNSH
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.9
0.63
0.9
73.7
36.4
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
47.1
-0.1
2.2
71.49
44.8

Associated Gene:

Gene:
ZFYVE21
Ensembl Gene ID:
ENSAPLG00000007132
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037138
54044196 - 54057145
12950
ENSAPLT00000007420
54044196 - 54057642
13447