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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54054782_54055597_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54054782 - 54055597
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGATGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCCTTCTTGATG
Flanking Amino Acid:
QILTEGFTPGEKDIHTYTSL
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
68.9
0.43
1
66.3
39.5
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
62.9
0.26
1.3
61.1
41.9

Associated Gene:

Gene:
ZFYVE21
Ensembl Gene ID:
ENSAPLG00000007132
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007420
54044196 - 54057642
13447