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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54059945_54060806_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54059945 - 54060806
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
EGYVPKNLLGLYPRIKPRQR
Intron Amino Acid Position:
1174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.4
33.4
Major BPS
100
1.24
0.5
100
0
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
42.4
-0.8
2.8
51.5
44.9
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
PPP1R13B
Ensembl Gene ID:
ENSAPLG00000007222
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027200
54059903 - 54129558
69656
ENSAPLT00000022954
54059903 - 54129558
69656
ENSAPLT00000007528
54059903 - 54117028
57126
ENSAPLT00000044798
54059903 - 54127984
68082