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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54062028_54062747_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54062028 - 54062747
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
VNVNAADSDGWTPLHCAASC
Intron Amino Acid Position:
1051

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.6
0.76
0.8
81.4
35
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
PPP1R13B
Ensembl Gene ID:
ENSAPLG00000007222
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022954
54059903 - 54129558
69656
ENSAPLT00000007528
54059903 - 54117028
57126
ENSAPLT00000044798
54059903 - 54127984
68082
ENSAPLT00000027200
54059903 - 54129558
69656