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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54062882_54062972_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54062882 - 54062972
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ATATTTTCAATA
Flanking Amino Acid:
FDLVQRIIYEVDDPSKPNDE
Intron Amino Acid Position:
1007

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
70.7
0.47
0.9
67.3
38.4
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
58.5
0.26
1.4
66.26
34.2

Associated Gene:

Gene:
PPP1R13B
Ensembl Gene ID:
ENSAPLG00000007222
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027200
54059903 - 54129558
69656
ENSAPLT00000022954
54059903 - 54129558
69656
ENSAPLT00000007528
54059903 - 54117028
57126
ENSAPLT00000044798
54059903 - 54127984
68082