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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54065468_54065947_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54065468 - 54065947
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAATAT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TAGTTCTTCACT
Flanking Amino Acid:
YNTLNKSVKAVYGKPVLQSG
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
71
35.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
37.6
-1.4
3.5
55.2
49
Minor BPS
65.9
0.58
1.8
80.47
41.5

Associated Gene:

Gene:
PPP1R13B
Ensembl Gene ID:
ENSAPLG00000007222
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022954
54059903 - 54129558
69656
ENSAPLT00000007528
54059903 - 54117028
57126
ENSAPLT00000044798
54059903 - 54127984
68082
ENSAPLT00000027200
54059903 - 54129558
69656