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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54066450_54067306_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54066450 - 54067306
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTTTA
5'SS Class:
major
3'SS Sequence:
TGTTCTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTTCTTACAC
Flanking Amino Acid:
TSVLGSTDKLGLDLGKVPPT
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
72.8
34.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.4
0.62
0.9
72.7
36.6
Minor 5ss
37.1
-1.5
3.2
45.3
45.2
Minor BPS
60.1
0.3
1.7
70.86
40.6

Associated Gene:

Gene:
PPP1R13B
Ensembl Gene ID:
ENSAPLG00000007222
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044798
54059903 - 54127984
68082
ENSAPLT00000027200
54059903 - 54129558
69656
ENSAPLT00000022954
54059903 - 54129558
69656
ENSAPLT00000007528
54059903 - 54117028
57126