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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54067477_54071680_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54067477 - 54071680
Intron Length:
4204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTATTTTAAAT
Flanking Amino Acid:
SSSTHGRSKSANDGNWPLLK
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.5
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
70.2
0.45
1.1
67.7
42.2
Minor 5ss
40.8
-1
2.8
50.5
40
Minor BPS
66.3
0.59
1.4
80.02
35.4

Associated Gene:

Gene:
PPP1R13B
Ensembl Gene ID:
ENSAPLG00000007222
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027200
54059903 - 54129558
69656