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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54095813_54104054_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54095813 - 54104054
Intron Length:
8242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
CTACTGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
ATTTGTTTATTT
Flanking Amino Acid:
CHLAEVWRGNERPIPFDHMM
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
74.5
37.6
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
75.3
0.57
0.9
73
37.1
Minor 5ss
39.2
-1.2
2.9
49.4
46.6
Minor BPS
56
0.27
2
77.64
39.7

Associated Gene:

Gene:
PPP1R13B
Ensembl Gene ID:
ENSAPLG00000007222
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022954
54059903 - 54129558
69656
ENSAPLT00000007528
54059903 - 54117028
57126
ENSAPLT00000044798
54059903 - 54127984
68082
ENSAPLT00000027200
54059903 - 54129558
69656