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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54104203_54116902_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54104203 - 54116902
Intron Length:
12700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGATTA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTTCTGAATA
Flanking Amino Acid:
WTKDRVVKKKMILTVFLSNN
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73.8
33
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
34.7
-1.7
3.4
46.4
48.9
Minor BPS
69.9
0.62
1.3
76.75
33.9

Associated Gene:

Gene:
PPP1R13B
Ensembl Gene ID:
ENSAPLG00000007222
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007528
54059903 - 54117028
57126