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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54104203_54127529_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54104203 - 54127529
Intron Length:
23327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTTCTGAATA
Flanking Amino Acid:
LPIAASCVFQMILTVFLSNN
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
78.1
29.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
31.2
-2.2
3.3
42.9
44.7
Minor BPS
69.9
0.62
1.3
76.75
33.9

Associated Gene:

Gene:
PPP1R13B
Ensembl Gene ID:
ENSAPLG00000007222
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044798
54059903 - 54127984
68082