Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54104203_54128594_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54104203 - 54128594

Intron Length:

24392

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TGTTTCTGAATA

Flanking Amino Acid:

MMPMILTVFLSNN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

68.8

Major BPS

82.1

0.8

71.6

36.4

Major PPT

97.3

1.06

0.5

96.6

11.5

Minor 5ss

27.1

-2.6

31.8

42.6

Minor BPS

69.9

0.62

1.3

76.75

33.9

Associated Gene:

Gene:

PPP1R13B

Ensembl Gene ID:

ENSAPLG00000007222

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027200

54059903 - 54129558

69656

ENSAPLT00000022954

54059903 - 54129558

69656