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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54145679_54163668_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54145679 - 54163668
Intron Length:
17990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATGTACTGAATT
Flanking Amino Acid:
DGPRESVVAVGLPSTERGGT
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
89.1
0.88
0.6
89
20.2
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
61
0.42
1.6
76.54
39.9

Associated Gene:

Gene:
TDRD9
Ensembl Gene ID:
ENSAPLG00000007429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007766
54145521 - 54214200
68680