About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54149072_54149835_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54149072 - 54149835
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCGATTTCAATT
Flanking Amino Acid:
QPCQTGTVLSRFREVLAEND
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1.1
84.4
33.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.1
0.7
0.9
73.5
41.9
Minor 5ss
43.9
-0.7
2.6
61.4
42.9
Minor BPS
49.8
0.07
1.5
63.73
41.6

Associated Gene:

Gene:
RD3L
Ensembl Gene ID:
ENSAPLG00000007355
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007623
54148774 - 54150134
1361