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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54163776_54166956_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54163776 - 54166956
Intron Length:
3181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTTTTCTGACTA
Flanking Amino Acid:
FGTDQFVYKLDTALPKCEPR
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
75
0.56
1
71.1
39.6
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
61
0.34
1.7
75.52
36.2

Associated Gene:

Gene:
TDRD9
Ensembl Gene ID:
ENSAPLG00000007429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007766
54145521 - 54214200
68680