Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54167650_54169181_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

54167650 - 54169181

Intron Length:

1532

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAAGAA

5'SS Class:

major

3'SS Sequence:

CAATGTGTGTTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTCAA

U12 Branch Point Sequence:

TGTTTCTCAATG

Flanking Amino Acid:

WTLGGFVGYQVSLEKVATKE

Intron Amino Acid Position:

196

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

66.4

32.6

Major BPS

85.7

0.89

0.8

85.9

22.5

Major PPT

55.9

0.13

1.1

54.3

45.3

Minor 5ss

35.2

-1.7

3.4

46.4

48.9

Minor BPS

63.9

0.3

1.6

68.05

39.8

Associated Gene:

Gene:

TDRD9

Ensembl Gene ID:

ENSAPLG00000007429

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007766

54145521 - 54214200

68680