Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54169305_54170354_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54169305 - 54170354

Intron Length:

1050

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

TGGATTCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATGAA

U12 Branch Point Sequence:

AAACCTGTAAAA

Flanking Amino Acid:

TEFTHIFIDEVHERTEEMDF

Intron Amino Acid Position:

237

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.04

0.8

78.8

38.3

Major BPS

67.7

0.44

38.9

Major PPT

75.5

0.57

45.2

Minor 5ss

39.6

-1.2

2.8

49.7

46.6

Minor BPS

45.8

-0.3

54.87

37.1

Associated Gene:

Gene:

TDRD9

Ensembl Gene ID:

ENSAPLG00000007429

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007766

54145521 - 54214200

68680