About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54174672_54178177_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54174672 - 54178177
Intron Length:
3506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTAACCTTATGC
Flanking Amino Acid:
DDLKHIVRSQLPPQRAEKPV
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
74.5
0.55
0.8
69
30.5
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
54.6
0.12
2
68.09
43.1

Associated Gene:

Gene:
TDRD9
Ensembl Gene ID:
ENSAPLG00000007429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007766
54145521 - 54214200
68680