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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54181724_54181855_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54181724 - 54181855
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ACATTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AAATATTTAATA
Flanking Amino Acid:
HSCLTNMFNKRWQVYPLHSR
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.3
17.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.1
0.59
0.8
74.3
35.7
Minor 5ss
39.5
-1.2
2.8
49
47.2
Minor BPS
60.8
0.33
1.4
64.98
34.9

Associated Gene:

Gene:
TDRD9
Ensembl Gene ID:
ENSAPLG00000007429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007766
54145521 - 54214200
68680