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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54181941_54182631_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54181941 - 54182631
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCAAAACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTTGCTTCAAAA
Flanking Amino Acid:
FLTPVPGYRKIILSTNIAES
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
87
27.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
61.8
0.27
1
52.1
40.6
Minor 5ss
42.7
-0.8
3
60.1
38.5
Minor BPS
51.7
0.05
1.8
64.41
42.2

Associated Gene:

Gene:
TDRD9
Ensembl Gene ID:
ENSAPLG00000007429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007766
54145521 - 54214200
68680