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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54189876_54190348_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54189876 - 54190348
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTACAA
5'SS Class:
major
3'SS Sequence:
TTTTCGTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TGATTGATAATT
Flanking Amino Acid:
VPFKQYIDGYRSKLFFSGNS
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
62.4
37.6
Major BPS
84.6
0.86
1
74
41.2
Major PPT
74.7
0.56
1
69.7
41.5
Minor 5ss
37.4
-1.4
3
47.8
47.7
Minor BPS
47.7
-0
2.2
70.08
41

Associated Gene:

Gene:
TDRD9
Ensembl Gene ID:
ENSAPLG00000007429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007766
54145521 - 54214200
68680