Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54192271_54193146_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54192271 - 54193146

Intron Length:

876

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTGCAT

U12 Branch Point Sequence:

TGCGTCTGCATT

Flanking Amino Acid:

RQRGELRHPKDELEWGRSNF

Intron Amino Acid Position:

663

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.7

0.82

1.1

81.4

27.6

Major BPS

62.4

0.31

1.4

73.6

41.8

Major PPT

91.3

0.93

0.6

84.1

30.8

Minor 5ss

35.9

-1.6

2.6

41.2

45.2

Minor BPS

44.7

-0.3

1.9

60.39

43.9

Associated Gene:

Gene:

TDRD9

Ensembl Gene ID:

ENSAPLG00000007429

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007766

54145521 - 54214200

68680