About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54195334_54197742_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54195334 - 54197742
Intron Length:
2409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTTCTTAACA
Flanking Amino Acid:
AGKDPKTTVLVKNIPPYGYL
Intron Amino Acid Position:
756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
73.1
34
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
87.9
0.85
0.8
85.2
28
Minor 5ss
38.6
-1.3
3
45.8
44.7
Minor BPS
91.6
1.3
0.7
95.02
20.5

Associated Gene:

Gene:
TDRD9
Ensembl Gene ID:
ENSAPLG00000007429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007766
54145521 - 54214200
68680