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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54200098_54201248_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54200098 - 54201248
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
CTTATACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATTCTTATACT
Flanking Amino Acid:
SHLLSISVTEIVEVGHFWGY
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.5
0.71
0.8
77.9
35.3
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
54.5
0.22
2
75.1
41.9

Associated Gene:

Gene:
TDRD9
Ensembl Gene ID:
ENSAPLG00000007429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007766
54145521 - 54214200
68680