Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54202799_54204300_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54202799 - 54204300

Intron Length:

1502

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGTTG

5'SS Class:

strong_major

3'SS Sequence:

GTTTTTGCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TTATTCTTAATG

Flanking Amino Acid:

PSHLQELPFQALEFKISKMR

Intron Amino Acid Position:

986

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

70.4

42.5

Major BPS

0.92

0.9

86.2

29.1

Major PPT

77.7

0.62

0.9

70.2

41.3

Minor 5ss

38.9

-1.2

3.6

54.5

49.7

Minor BPS

77.4

0.72

1.2

75.74

36.2

Associated Gene:

Gene:

TDRD9

Ensembl Gene ID:

ENSAPLG00000007429

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007766

54145521 - 54214200

68680