About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54205147_54206240_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54205147 - 54206240
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTTCTTTTATT
Flanking Amino Acid:
GSRSGAPTHKVTVSGPFSPY
Intron Amino Acid Position:
1123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75.3
40.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78
0.63
1
79.8
31.1
Minor 5ss
34.1
-1.8
3.2
49.3
46.5
Minor BPS
69.8
0.7
1.5
84.47
36.2

Associated Gene:

Gene:
TDRD9
Ensembl Gene ID:
ENSAPLG00000007429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007766
54145521 - 54214200
68680