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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54207041_54207700_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54207041 - 54207700
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTAATA
5'SS Class:
major
3'SS Sequence:
TTTCTTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AGTTTGTTAATC
Flanking Amino Acid:
SMLFAPAIELRIDESGKNFT
Intron Amino Acid Position:
1215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
87.1
0.84
0.8
83.5
31.6
Minor 5ss
43.2
-0.7
2.8
58
46.2
Minor BPS
57.5
0.21
2
68.84
36.9

Associated Gene:

Gene:
TDRD9
Ensembl Gene ID:
ENSAPLG00000007429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007766
54145521 - 54214200
68680