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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54207840_54208937_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54207840 - 54208937
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TATTCTGTCACT
Flanking Amino Acid:
VHFGVDDISEINILRTAINK
Intron Amino Acid Position:
1262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
88.7
0.87
0.7
83.4
31.6
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
53.1
0.18
2.4
80.6
41.6

Associated Gene:

Gene:
TDRD9
Ensembl Gene ID:
ENSAPLG00000007429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007766
54145521 - 54214200
68680