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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54209048_54212010_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54209048 - 54212010
Intron Length:
2963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTAATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATT
Flanking Amino Acid:
LQENIREMLLSLICKSRPRD
Intron Amino Acid Position:
1298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
83.7
34.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.3
0.73
0.9
79.2
37.9
Minor 5ss
45.4
-0.5
2.9
66.6
44.4
Minor BPS
74.3
0.84
1.3
87.25
31.8

Associated Gene:

Gene:
TDRD9
Ensembl Gene ID:
ENSAPLG00000007429
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007766
54145521 - 54214200
68680