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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54232240_54235921_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54232240 - 54235921
Intron Length:
3682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TCTTTCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTTAT
U12 Branch Point Sequence:
TTTCCCCCAATT
Flanking Amino Acid:
HEFPENTLVLPLSKQNKRIF
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.3
70.1
40.6
Major BPS
55.8
0.14
1.4
49.4
46
Major PPT
84.8
0.78
0.7
80
25.5
Minor 5ss
38.9
-1.3
2.7
51.9
37.5
Minor BPS
59.3
0.37
1.9
83.01
37.8

Associated Gene:

Gene:
ASPG
Ensembl Gene ID:
ENSAPLG00000008103
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040501
54231856 - 54269072
37217
ENSAPLT00000024469
54226212 - 54269072
42861
ENSAPLT00000008444
54217730 - 54269072
51343