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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54250219_54253159_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54250219 - 54253159
Intron Length:
2941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTTTTTATT
Flanking Amino Acid:
SVTTVYATGQTLADVGVIPG
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.9
0.88
0.7
88.7
27.1
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
61.5
0.44
1.6
80.48
35.3

Associated Gene:

Gene:
ASPG
Ensembl Gene ID:
ENSAPLG00000008103
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024469
54226212 - 54269072
42861
ENSAPLT00000008444
54217730 - 54269072
51343
ENSAPLT00000040501
54231856 - 54269072
37217