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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54256367_54257452_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54256367 - 54257452
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTACTTTTATT
Flanking Amino Acid:
ARSLSISCKEELEAVRDALI
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
79.5
33.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.1
0.74
0.8
81
36
Minor 5ss
43.8
-0.7
2.7
60.9
43.5
Minor BPS
66.6
0.6
1.6
84.49
36.1

Associated Gene:

Gene:
ASPG
Ensembl Gene ID:
ENSAPLG00000008103
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040501
54231856 - 54269072
37217
ENSAPLT00000024469
54226212 - 54269072
42861
ENSAPLT00000008444
54217730 - 54269072
51343