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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54257549_54258398_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54257549 - 54258398
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGTAA
5'SS Class:
major
3'SS Sequence:
TGTCCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TATCTTTTCAGC
Flanking Amino Acid:
IDAIRAIAEMGGNLSCEDYD
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
66.5
34.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
82.5
0.73
0.7
81
31
Minor 5ss
36.3
-1.6
3.3
43.5
46
Minor BPS
46.8
-0.2
2
59.94
39.6

Associated Gene:

Gene:
ASPG
Ensembl Gene ID:
ENSAPLG00000008103
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024469
54226212 - 54269072
42861
ENSAPLT00000008444
54217730 - 54269072
51343
ENSAPLT00000040501
54231856 - 54269072
37217