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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54264975_54268590_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54264975 - 54268590
Intron Length:
3616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACCGATTTAATT
Flanking Amino Acid:
DLENTGAILCSLAAKGDVDG
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
94.4
1
0.6
87.9
29.4
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
50.6
0.1
1.6
62.25
42.8

Associated Gene:

Gene:
ASPG
Ensembl Gene ID:
ENSAPLG00000008103
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040501
54231856 - 54269072
37217
ENSAPLT00000024469
54226212 - 54269072
42861
ENSAPLT00000008444
54217730 - 54269072
51343