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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54268691_54269012_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54268691 - 54269012
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TTTCTATTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTCTATTCACA
Flanking Amino Acid:
GYDGKNPRQVAEAMGCKEVL
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
77
31.5
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
85.2
0.79
0.7
80.3
30.6
Minor 5ss
38.1
-1.3
3.3
50.7
41.2
Minor BPS
53.6
0.11
2
73.68
37.8

Associated Gene:

Gene:
ASPG
Ensembl Gene ID:
ENSAPLG00000008103
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024469
54226212 - 54269072
42861
ENSAPLT00000008444
54217730 - 54269072
51343
ENSAPLT00000040501
54231856 - 54269072
37217