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Intron Name: Anas_platyrhynchos_platyrhynchos_5_542972_545844_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

542972 - 545844

Intron Length:

2873

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCTATT

5'SS Class:

weak_major

3'SS Sequence:

TGTCTTTTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

AAGTTACTAATA

Flanking Amino Acid:

GLEKPKPRPEDIVNCDLKST

Intron Amino Acid Position:

348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.1

83.5

35.1

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

83.9

0.76

0.8

77.1

37.1

Minor 5ss

61.6

0.39

2.1

77.4

37.4

Minor BPS

46.8

-0.2

1.8

56.59

36.3

Associated Gene:

Gene:

PARVA

Ensembl Gene ID:

ENSAPLG00000016301

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017020

542895 - 604188

61294