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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54384495_54386186_F

Intron Information:

Intron Rank:
42210
Intron Class:
major
Intron Phase:
Intron Coordinates:
54384495 - 54386186
Intron Length:
1692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGAAA
5'SS Class:
major
3'SS Sequence:
ATCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.4
36.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
87.2
0.84
0.7
85.1
29
Minor 5ss
37.7
-1.4
3.1
48.2
47.6
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006798
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007057
54334451 - 54399040
64590