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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54387498_54387790_F

Intron Information:

Intron Rank:
42213
Intron Class:
major
Intron Phase:
Intron Coordinates:
54387498 - 54387790
Intron Length:
293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGAATC
5'SS Class:
major
3'SS Sequence:
CTTTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATGAT
U12 Branch Point Sequence:
TGATGTACAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
72.9
36.7
Major BPS
63.3
0.33
1.1
53.7
41.6
Major PPT
85.3
0.79
0.8
84.6
30.3
Minor 5ss
38.7
-1.3
3.3
52.5
38.5
Minor BPS
45.4
-0.2
2.1
66.99
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006798
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007057
54334451 - 54399040
64590