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Intron Name: Anas_platyrhynchos_platyrhynchos_5_54393659_54397139_F

Intron Information:

Intron Rank:

42222

Intron Class:

major

Intron Phase:

Intron Coordinates:

54393659 - 54397139

Intron Length:

3481

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTGTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTGAT

U12 Branch Point Sequence:

GTCTGATGAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.94

0.8

78.6

37.2

Major BPS

73.6

0.59

1.2

65.3

43.7

Major PPT

82.6

0.73

0.9

81.2

36.5

Minor 5ss

31.6

-2.1

3.1

38.7

46.6

Minor BPS

47.4

-0.2

2.1

62.34

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006798

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007057

54334451 - 54399040

64590