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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54397331_54398194_F

Intron Information:

Intron Rank:
42223
Intron Class:
major
Intron Phase:
Intron Coordinates:
54397331 - 54398194
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGCACA
5'SS Class:
major
3'SS Sequence:
TCTGTTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
71.6
40.2
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
68.8
0.42
1.1
71.3
37.5
Minor 5ss
35.1
-1.7
2.7
41.7
44.5
Minor BPS
67.8
0.64
1.7
82.92
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006798
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007057
54334451 - 54399040
64590