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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54398346_54398864_F

Intron Information:

Intron Rank:
42224
Intron Class:
major
Intron Phase:
Intron Coordinates:
54398346 - 54398864
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTGGTCTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
75.1
40.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.5
0.53
1.1
68.8
42.1
Minor 5ss
43.1
-0.8
3.2
69.3
40.9
Minor BPS
61.3
0.43
1.8
81.61
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006798
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007057
54334451 - 54399040
64590