Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54409418_54412223_F

Intron Information:

Intron Rank:

132090

Intron Class:

major

Intron Phase:

Intron Coordinates:

54409418 - 54412223

Intron Length:

2806

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGATGT

5'SS Class:

major

3'SS Sequence:

TGTTTGTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTAAT

U12 Branch Point Sequence:

TAACAGCTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

68.5

39.2

Major BPS

70.5

0.51

1.1

69.7

35.5

Major PPT

0.81

0.8

80.6

Minor 5ss

33.8

-1.8

3.1

39.1

46.1

Minor BPS

39.2

-0.9

2.3

45.06

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020973

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030726

54408479 - 54482145

73667