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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_54412381_54481229_F

Intron Information:

Intron Rank:
132091
Intron Class:
major
Intron Phase:
Intron Coordinates:
54412381 - 54481229
Intron Length:
68849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
GATACTATAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
53
0.08
1.6
62.27
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020973
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030726
54408479 - 54482145
73667