Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5444654_5452984_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5444654 - 5452984

Intron Length:

8331

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAAGAAG

5'SS Class:

major

3'SS Sequence:

GTTTTCTACTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAC

U12 Branch Point Sequence:

GATTCCTCACTA

Flanking Amino Acid:

GGGIQERYMMASILARTGFQ

Intron Amino Acid Position:

776

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

64.6

40.9

Major BPS

72.4

0.56

73.5

32.5

Major PPT

79.1

0.65

0.9

77.8

35.7

Minor 5ss

31.1

-2.2

3.2

35.8

42.4

Minor BPS

54.2

0.13

1.8

65.79

40.6

Associated Gene:

Gene:

SPON1

Ensembl Gene ID:

ENSAPLG00000006849

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010246

5444213 - 5633863

189651