About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5451861_5452984_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5451861 - 5452984
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTAACTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
GGGIQERYMMSLRGSKNYYI
Intron Amino Acid Position:
776

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
64.6
40.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.6
0.73
0.9
82.5
32.9
Minor 5ss
31.1
-2.2
3.2
35.8
42.4
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
SPON1
Ensembl Gene ID:
ENSAPLG00000006849
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007124
5451750 - 5633863
182114