Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5454140_5455868_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5454140 - 5455868

Intron Length:

1729

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTAAGTGTG

5'SS Class:

major

3'SS Sequence:

TCATTCTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTTTGTGTAATA

Flanking Amino Acid:

QAEKCMLPECPIDCELTEWS

Intron Amino Acid Position:

661

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.3

67.4

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

85.6

0.8

80.6

31.1

Minor 5ss

38.2

-1.3

3.3

53.8

43.6

Minor BPS

52.4

0.07

2.3

74.34

38.4

Associated Gene:

Gene:

SPON1

Ensembl Gene ID:

ENSAPLG00000006849

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010246

5444213 - 5633863

189651

ENSAPLT00000007124

5451750 - 5633863

182114