About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5457924_5458352_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5457924 - 5458352
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
TTCTTATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATTT
Flanking Amino Acid:
ADLAPEEKEEDDTPETCIYS
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.1
0.81
0.7
85.4
28.1
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
68.8
0.67
1.6
82.89
39.2

Associated Gene:

Gene:
SPON1
Ensembl Gene ID:
ENSAPLG00000006849
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010246
5444213 - 5633863
189651
ENSAPLT00000007124
5451750 - 5633863
182114